Chinta Rambabu

Quantitative microscopy uncovers ploidy changes during mitosis of live Drosophila maternal-haploid embryos and their effect on nuclear size

Published date : 15 Mar 2017

Time-lapse microscopy is a powerful tool to investigate cellular and developmental dynamics. In Drosophila melanogaster, it can be used to study division cycles in embryogenesis. To obtain quantitative information from 3D time-lapse data and track proliferating nuclei from the syncytial stage until gastrulation, we developed an image analysis pipeline consisting of nuclear segmentation, tracking, annotation and quantification. Image analysis of maternal-haploid (mh) embryos revealed that a fraction of haploid syncytial nuclei fused to give rise to nuclei of higher ploidy (2n, 3n, 4n).

type
Journal Paper
journal
Biology Open 2017 6: 390-401; doi: 10.1242/bio.022079
Impact Factor
2.135

The study of muscle remodeling in Drosophila metamorphosis using in vivo microscopy and bioimage informatics

Published date : 02 Oct 2012

Abstract
Background

Metamorphosis in insects transforms the larval into an adult body plan and comprises the destruction and remodeling of larval and the generation of adult tissues. The remodeling of larval into adult muscles promises to be a genetic model for human atrophy since it is associated with dramatic alteration in cell size. Furthermore, muscle development is amenable to 3D in vivo microscopy at high cellular resolution. However, multi-dimensional image acquisition leads to sizeable amounts of data that demand novel approaches in image processing and analysis.
Results

type
Conference Paper/Poster
journal
Proceedings of Asia Pacific Bioinformatics Network (APBioNet) Eleventh International Conference on Bioinformatics (InCoB2012), Bangkok, Thailand 2-5 Oct 2012
Impact Factor
2.751

Three-Dimensional Segmentation of Nuclei and Mitotic Chromosomes for the Study of Cell Divisions in Live Drosphila Embryos

Published date : 10 Nov 2011

Drosophila embryogenesis is an established model to investigate mechanisms and genes related to cell divisions in an intact multicellular organism. Progression through the cell cycle phases can be monitored in vivo using fluorescently labeled fusion proteins andtime-lapse microscopy. To measure cellular properties in microscopic images, accurate and fast image segmentation methods are a critical prerequisite. To quantify static and dynamic features of interphase nuclei and mitotic chromosomes, we developed a three-dimensional (3D) segmentation method based on multiple level sets.

type
Journal Paper
journal
Cytometry Part A

3D Segmentation for the study of Cell Cyle Progression in Live Drosophila Embryos

Published date : 14 Jan 2009
type
Conference Paper/Poster
journal
Proceedings of the First International Workshop on Medical Image Analysis and Description for Diagnosis Systems - MIAD 2009, BIOSTEC 2009, Porto Portugal, 14-17 Jan 2009, Pg 43-51, ISBN: 978-989-8111-77-7
Impact Factor
NIL