GOLE Laurent

OpenSegSPIM: a user-friendly segmentation tool for SPIM data

Published date : 22 Feb 2016

OpenSegSPIM is an open access and user friendly 3-D automatic quantitative analysis tool for Single Plane Illumination Microscopy (SPIM) data. The software is designed to extract, in a user friendly way, quantitative relevant information from SPIM image stacks, such as the number of nuclei or cells. It provides quantitative measurement (volume, sphericity, distance, intensity) on Light Sheet Fluorescent Microscopy (LSFM) images.

Journal Paper
Bioinformatics, 2016, doi: 10.1093/bioinformatics/btw093
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